rs51881899 SNP Detail

Summary

• ID
  rs51881899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:103215855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGTG AATATCTGAG TAGTTTATAA
  Y
  ATTCTTCTGG GTCATTTCAA AGATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss62546697	NES17287122	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs51881899					SNP	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62546697	NES17287122	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:103215855 () rs orientation: forward

Symbol	Name	Function Class
Kctd12	potassium channel tetramerisation domain containing 12	within coordinates
Rr404259	regulatory region 404259	1190 bp upstream
Rr496944	regulatory region 496944	253 bp proximal
Rr496945	regulatory region 496945	1269 bp proximal
Tssr126949	transcription start site region 126949	1689 bp upstream
Tssr130053	transcription start site region 130053	493 bp upstream
Tssr130054	transcription start site region 130054	448 bp upstream
Tssr130055	transcription start site region 130055	282 bp upstream
Tssr130056	transcription start site region 130056	139 bp downstream
Tssr130057	transcription start site region 130057	244 bp downstream
Tssr130058	transcription start site region 130058	1327 bp downstream
Tssr130059	transcription start site region 130059	1355 bp downstream