rs51882187 SNP Detail

Summary

• ID
  rs51882187
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147216995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAGGGCT ATTAAATGAT
  TTCAAGTTAA GGCGCACTGG TGGTGGGGAC TCTGAGCATA ATTCAATTGT TGTAGTCATA
  AACATATTAC TGGTGAGAGT CTGACTTCAC CTGTTAAACA TGGCTGCCTT TGAATAAAGG
  AAAGTCTGAA ACTCGCCAGC TTGGTGAGGG AGAAAGTCTG TGTTCTGTGT TTGTGCTTAA
  Y
  CTGGACTCCC TCCATCGCTC CATCCAGGAT GCACACGATC AGAGGATGAG TTCTTGATTT
  TCTTGGGTAC TCACTGCTCT GCTTGGGCAG CCGCTGAAAA AGAAGGTGAC CTGCATGGGG
  GCATTTGTCA GTGGCTCCAC CAGGTTGGTG TGCCCCTACC CCACTCCCCC CCTGGCCAGC
  ATGGTCCAGG AAGTGCCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147887019	ENSMUSSNP7199992	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51882187					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147216995 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12389	CpG island 12389	1178 bp distal
Pax1	paired box 1	23 bp downstream
Tssr20631	transcription start site region 20631	1212 bp downstream
Tssr20632	transcription start site region 20632	1156 bp downstream
Tssr20633	transcription start site region 20633	1120 bp downstream
Tssr20634	transcription start site region 20634	1027 bp downstream
Tssr20635	transcription start site region 20635	453 bp upstream