rs51883378 SNP Detail

Summary

• ID
  rs51883378
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:176719018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAATTTTA ATACTAAAAG
  GTCAGGCTTC TTTAAACCTA GAGAAATTAT TTGCATAGAG ATTTCTTTAG AGAAAATAAC
  CAAATGGTAA AAGGTATATG AAAGGACACT TACCATTAAC TGTCAGAGGG ATGTAACAAA
  ACTCATGTGA GATACCACAC TACATCTCAT AACCAATTGG TAAAAGGCAT ATGAAAGGAC
  R
  CTTACCATTA ACTGGCAGAG GGACATGGCC AAACTCATGT GAGAATCCAT ACCACATCTC
  ATAAACATAG CTCTAATTTA AAAGACAATA ATAATAGGCT GGTGAGGTGG CTCAGTAGTC
  AGAAACACTT GTCATGCCAG CCTGGGGGTC TGAGCCCATG CCTGGAACCC ATGGTGGAAG
  GAGAGAATAG ACTCCCGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60349115	NES15853488	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		A	A	A	G		A
ss320158160	CHEV_1_178821583	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51883378					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60349115	NES15853488	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176719018 () rs orientation: forward

Symbol	Name	Function Class
Gm37490	predicted gene, 37490	1222 bp downstream
Rr423928	regulatory region 423928	560 bp distal
Sdccag8	serologically defined colon cancer antigen 8	within coordinates