rs51883928 SNP Detail

Summary

• ID
  rs51883928
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54801440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GCTTCTAGAA TCTGTGACCC AGTTCCCATC GGCTGGTCCT
  CACCCACCTT CCCCAGGGCA TTGAGGGCTG AGAGAGGGTG TCGTTTCTGA AGGATGGCAA
  M
  TAAAGCTTAC CCAAGTCCTT TGCCCGGGAT CTTCCCACCA TGCTTGGGTG CCCCTAAGAT
  GCTAGCAGCA TTCCCAGGGC TGTGCAGGAA AGGGATCTGA A                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132141001	ENSMUSSNP6115312	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51883928					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54801440 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	227 bp downstream
Tnip1	TNFAIP3 interacting protein 1	171 bp downstream
Tssr3502	transcription start site region 3502	970 bp upstream
Tssr3503	transcription start site region 3503	498 bp downstream
Tssr101563	transcription start site region 101563	1998 bp downstream
Tssr101564	transcription start site region 101564	1977 bp downstream
Tssr101565	transcription start site region 101565	1547 bp downstream
Tssr101566	transcription start site region 101566	1501 bp downstream
Tssr101567	transcription start site region 101567	1138 bp downstream
Tssr101568	transcription start site region 101568	1064 bp downstream
Tssr101569	transcription start site region 101569	981 bp downstream
Tssr101570	transcription start site region 101570	930 bp downstream
Tssr101571	transcription start site region 101571	854 bp downstream
Tssr101572	transcription start site region 101572	810 bp downstream
Tssr101573	transcription start site region 101573	783 bp downstream
Tssr101574	transcription start site region 101574	758 bp downstream
Tssr101575	transcription start site region 101575	711 bp downstream
Tssr101576	transcription start site region 101576	690 bp downstream
Tssr101577	transcription start site region 101577	668 bp downstream
Tssr101578	transcription start site region 101578	583 bp downstream
Tssr108008	transcription start site region 108008	1979 bp upstream
Tssr108009	transcription start site region 108009	1963 bp upstream
Tssr108010	transcription start site region 108010	1543 bp upstream
Tssr108011	transcription start site region 108011	927 bp upstream
Tssr108012	transcription start site region 108012	846 bp upstream
Tssr108013	transcription start site region 108013	826 bp upstream
Tssr108014	transcription start site region 108014	811 bp upstream
Tssr108015	transcription start site region 108015	730 bp upstream
Tssr108016	transcription start site region 108016	668 bp upstream
Tssr108017	transcription start site region 108017	627 bp upstream
Tssr108018	transcription start site region 108018	606 bp upstream
Tssr108019	transcription start site region 108019	537 bp upstream
Tssr108020	transcription start site region 108020	518 bp upstream
Tssr108021	transcription start site region 108021	501 bp upstream
Tssr108022	transcription start site region 108022	458 bp upstream
Tssr108023	transcription start site region 108023	234 bp upstream