rs51883994 SNP Detail

Summary

• ID
  rs51883994
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40159346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCGTCTGG GACCGCCTCC GATTTCCCCT CCCCCTCCCC
  TCTCCCTCGT CCGGCTCTGA CCTCGCCACC CTACCGCGGC GGCGGCTGCT CGCGGGCGTC
  K
  TGCCTCTTTC CCGTCCGGCT CTTCCGTGTC TACGAGGGGC GGTACGTCGT TACGGGTTTT
  TGACCCGTCC CGGGGGCGTT CGGTCGTCGG GGCGCGCGC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	LG/J	NZW/LacJ	SM/J
ss62722064	NES17331411	PERLEGEN	MM_PANEL2	f	SNP	G	T	T		T
ss325385456	CHEV_17_39985400	CHEVERUD	SCREENING_POP	f	SNP				T		T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	DBA/2J	LG/J	NZW/LacJ	SM/J
rs51883994					SNP	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62722064	NES17331411	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40159346 () rs orientation: forward

Symbol	Name	Function Class
AY036118	cDNA sequence AY036118	within coordinates
Cpgi9159	CpG island 9159	within coordinates
Gm26917	predicted gene, 26917	within coordinates
Rn18s	18S ribosomal RNA	254 bp distal
Rn18s-rs5	18s RNA, related sequence 5	253 bp downstream
Rr526923	regulatory region 526923	1535 bp distal
Tssr144603	transcription start site region 144603	1951 bp downstream
Tssr144604	transcription start site region 144604	1930 bp downstream
Tssr144605	transcription start site region 144605	1882 bp downstream
Tssr144606	transcription start site region 144606	1798 bp downstream
Tssr144607	transcription start site region 144607	1697 bp downstream
Tssr144608	transcription start site region 144608	1561 bp downstream
Tssr144609	transcription start site region 144609	1396 bp downstream
Tssr144610	transcription start site region 144610	1240 bp downstream
Tssr144611	transcription start site region 144611	1117 bp downstream
Tssr144612	transcription start site region 144612	1007 bp downstream
Tssr144613	transcription start site region 144613	863 bp downstream
Tssr144614	transcription start site region 144614	841 bp downstream
Tssr144615	transcription start site region 144615	760 bp downstream
Tssr144616	transcription start site region 144616	670 bp downstream
Tssr144617	transcription start site region 144617	643 bp downstream
Tssr144618	transcription start site region 144618	626 bp downstream
Tssr144619	transcription start site region 144619	583 bp downstream
Tssr144620	transcription start site region 144620	560 bp downstream
Tssr144621	transcription start site region 144621	446 bp downstream
Tssr144622	transcription start site region 144622	430 bp downstream
Tssr144623	transcription start site region 144623	400 bp downstream
Tssr144624	transcription start site region 144624	265 bp downstream
Tssr144625	transcription start site region 144625	248 bp downstream
Tssr144626	transcription start site region 144626	219 bp downstream
Tssr144627	transcription start site region 144627	187 bp downstream
Tssr144628	transcription start site region 144628	28 bp downstream
Tssr144629	transcription start site region 144629	within coordinates
Tssr144630	transcription start site region 144630	50 bp upstream
Tssr144631	transcription start site region 144631	71 bp upstream
Tssr144632	transcription start site region 144632	243 bp upstream
Tssr144633	transcription start site region 144633	296 bp upstream
Tssr148062	transcription start site region 148062	1914 bp upstream
Tssr148063	transcription start site region 148063	1772 bp upstream
Tssr148064	transcription start site region 148064	1546 bp upstream
Tssr148065	transcription start site region 148065	671 bp upstream
Tssr148066	transcription start site region 148066	594 bp upstream
Tssr148067	transcription start site region 148067	494 bp upstream
Tssr148068	transcription start site region 148068	396 bp upstream
Tssr148069	transcription start site region 148069	213 bp upstream
Tssr148070	transcription start site region 148070	149 bp upstream
Tssr148071	transcription start site region 148071	123 bp upstream
Tssr148072	transcription start site region 148072	182 bp downstream