rs51885110 SNP Detail

Summary

• ID
  rs51885110
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:32427514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGTGAA ATATAAAGAT
  CTCTAGATTA GGGACATAAA GCTCTATAGC AGCAACCCTG CTGTTAGCAA GCTGTCTTAA
  TAAACTCCTG TGGGTCTAAA CTGCCCTCAT CTGTGCGACA AGAAGACTGA ACCAGGTGTG
  TCTCAGCTCA AATATTTAAA GGAACTATTT TAACTGTATG CAGATCACAA AAATTTGGCA
  Y
  TGCATTCATT GTGTGCTGCA AAATAAGATA CTTACTGAAG AAAATTCTAG CACCAGGACA
  TAGATTTAAA AAAAAAAAAC CTTATTTTAC AGAAATCTTA GGGGCTGGAG GGTATAGATC
  ACTAGTAGGG TGCAGTCTTC ATATGTGTGA AGCTCTGGGT TCTATCCCCA GCAAGGGGAA
  TAATGAAGTT TAAAGGACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52371634	NES15392175	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51885110					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52371634	NES15392175	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:32427514 () rs orientation: forward

Symbol	Name	Function Class
Ccdc71l	coiled-coil domain containing 71 like	1274 bp upstream
Cpgi4541	CpG island 4541	917 bp proximal
Rr403262	regulatory region 403262	944 bp upstream
Rr464758	regulatory region 464758	699 bp proximal
Rr464759	regulatory region 464759	1832 bp proximal
Tssr113128	transcription start site region 113128	1177 bp upstream
Tssr113129	transcription start site region 113129	1249 bp upstream
Tssr113130	transcription start site region 113130	1357 bp upstream
Tssr113131	transcription start site region 113131	1396 bp upstream
Tssr113132	transcription start site region 113132	1555 bp upstream
Tssr113133	transcription start site region 113133	1616 bp upstream
Tssr113134	transcription start site region 113134	1706 bp upstream