rs51885266 SNP Detail

Summary

• ID
  rs51885266
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164267259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTACTACTGT AGCTAACACA GCGCCAGCCT ACTGTAAACC
  TGACTAGGGA CAATGAGAAG CTAACTGGGT GCCTGCTAAG ATGGCAGTCA CCACATGGAG
  W
  GTCCAGTGCA CCTCTAGTGC AAGAGCTGGA CTTGTATACT GAGGCAAGGG TAAATATGTC
  GGGCTTTTCC TCAACAATGC TGTCTTCAAA CAGGCTTTC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60337239	NES15839919	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	A	T	T	A	T	T	A	T
ss145978640	ENSMUSSNP7134911	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51885266					SNP	T	T	T	T	T	T	A	A	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60337239	NES15839919	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164267259 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Rr13721	regulatory region 13721	1059 bp distal
Rr20253	regulatory region 20253	within coordinates
Rr25446	regulatory region 25446	1270 bp distal
Rr25447	regulatory region 25447	774 bp distal
Rr25448	regulatory region 25448	299 bp distal
Rr31656	regulatory region 31656	342 bp proximal
Tssr9784	transcription start site region 9784	1183 bp downstream
Tssr14732	transcription start site region 14732	1930 bp upstream
Tssr14733	transcription start site region 14733	1831 bp upstream
Tssr14734	transcription start site region 14734	1786 bp upstream
Tssr14735	transcription start site region 14735	1732 bp upstream
Tssr14736	transcription start site region 14736	1691 bp upstream
Tssr14737	transcription start site region 14737	1631 bp upstream
Tssr14738	transcription start site region 14738	1495 bp upstream
Tssr14739	transcription start site region 14739	1311 bp upstream
Tssr14740	transcription start site region 14740	1270 bp upstream
Tssr14741	transcription start site region 14741	1193 bp upstream
Tssr14742	transcription start site region 14742	1151 bp upstream
Tssr14743	transcription start site region 14743	1868 bp downstream
Tssr14744	transcription start site region 14744	1917 bp downstream