rs51886809 SNP Detail

Summary

• ID
  rs51886809
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49591400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTCAGCT CCTACCACCT
  CTGAAGTCAG TTGTTTGATA TTCGGAAATT TTGAGAGCTA GGTAACTGTT GATAACTTCC
  CACCAGCCCA TTGTGAGTGT TTACACCACA GGAATAGAAA AATCACTACA GATCAGACCG
  TTAGACAAAC AGCCAGTTTA CTCACATGCC GCTGACAACA GCAGTTTAAT GTTCTGCATC
  R
  AGATAAGCAA CAGTATTTTA AGGTACGTAG TTAAGGTACA TTATTATCAT ATTGCTAGTT
  GAATTAGGCC AGATTTGTAA ATTATTCTTC AAAAAAATCA GTCTACATAA AGCCACTCTG
  TGTGTCAAAT GTGTATCCCC TGAACCATTT TATTGATACT ATCCCATGGC CCTTTCTAAA
  TATCACCTTT TACTGCTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60460809	NES16446417	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	G	G	G	G	G	G	G	G	G
ss148122748	ENSMUSSNP912057	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51886809					SNP	A	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60460809	NES16446417	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49591400 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Rr516711	regulatory region 516711	685 bp distal
Rr516712	regulatory region 516712	303 bp proximal
Rr516713	regulatory region 516713	1380 bp proximal
Tssr138713	transcription start site region 138713	414 bp downstream
Tssr138714	transcription start site region 138714	1789 bp upstream
Tssr141328	transcription start site region 141328	1215 bp upstream
Tssr141329	transcription start site region 141329	234 bp upstream
Tssr141330	transcription start site region 141330	220 bp upstream
Tssr141331	transcription start site region 141331	201 bp upstream
Tssr141332	transcription start site region 141332	174 bp upstream
Tssr141333	transcription start site region 141333	644 bp downstream
Tssr141334	transcription start site region 141334	799 bp downstream
Tssr141335	transcription start site region 141335	1733 bp downstream