rs51887861 SNP Detail

Summary

• ID
  rs51887861
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:73188912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACACAAAC ATTCTTTAAA
  CTTTACAATC TTTAAAGGAA GTGATGTCAT AACTGTATAC ATGCATTAAT AATGTATATA
  ACTTAAGAGT AACAGTAATT TAAAAGTAAC TCCATCTTCA ACAAGTCTGG AGTATTCTGG
  ACATTCATCA AATATATGAT TTAAAGTATA CTTGGCAAAA ACAGTAAAAA CCTGCTTCTT
  S
  TTTTGACTAA AGGAATTAAA TGCATCACAA TGCCCAAGTT ATTACCCAAA TAATACTAAG
  TTTATTCAAA GACATCACTT CAAGAGTTAG AGCAGTCTGA TCAATGAAAC AAAAAACCTT
  GCATAAGAAA GCCAAAACCC TGGTGAGAAT ATGCAAATCA TATACTCAAG GGGGTAACAA
  GTCTAACTCT GGGTCTTTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61020024	NES16105289	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51887861					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61020024	NES16105289	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:73188912 () rs orientation: forward

Symbol	Name	Function Class
Chaserr	CHD2 adjacent suppressive regulatory RNA	634 bp downstream
Chd2	chromodomain helicase DNA binding protein 2	within coordinates
Cpgi19266	CpG island 19266	1006 bp distal
Gm44686	predicted gene 44686	within coordinates
Rr380950	regulatory region 380950	450 bp downstream
Tssr67202	transcription start site region 67202	1194 bp downstream
Tssr67203	transcription start site region 67203	1106 bp downstream
Tssr67204	transcription start site region 67204	1072 bp downstream
Tssr67205	transcription start site region 67205	200 bp upstream
Tssr72947	transcription start site region 72947	1398 bp upstream
Tssr72948	transcription start site region 72948	96 bp downstream
Tssr72949	transcription start site region 72949	1724 bp downstream
Tssr72950	transcription start site region 72950	1921 bp downstream