rs51888198 SNP Detail

Summary

• ID
  rs51888198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96182685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCGA GCTTGGCCCC TATCCAGGAC
  R
  CCTTCCCTCC CGAGGCAAAA ACTAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss132676638	ENSMUSSNP5856227	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51888198					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96182685 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3639	CpG island 3639	1443 bp proximal
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Hoxb6	homeobox B6	962 bp upstream
Hoxb7	homeobox B7	1697 bp downstream
Rr386515	regulatory region 386515	within coordinates
Rr455356	regulatory region 455356	127 bp proximal
Rr455357	regulatory region 455357	628 bp proximal
Rr455358	regulatory region 455358	1548 bp proximal
Rr455359	regulatory region 455359	1775 bp proximal
Tssr104478	transcription start site region 104478	294 bp upstream
Tssr104479	transcription start site region 104479	594 bp upstream