rs51888653 SNP Detail

Summary

• ID
  rs51888653
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:114780512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTA TAATAGCTAG CTATTGGGTG
  G
  CCTGTTTTAC AATAAGGTCA GAGTT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss132864682	ENSMUSSNP5105496	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs51888653					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:114780512 () rs orientation: forward

Symbol	Name	Function Class
Cd300a	CD300A molecule	within coordinates
Cpgi4106	CpG island 4106	477 bp proximal
Rr459730	regulatory region 459730	414 bp proximal
Tssr105810	transcription start site region 105810	498 bp upstream
Tssr105811	transcription start site region 105811	529 bp upstream
Tssr105812	transcription start site region 105812	586 bp upstream
Tssr105813	transcription start site region 105813	691 bp upstream
Tssr105814	transcription start site region 105814	1326 bp upstream
Tssr111666	transcription start site region 111666	538 bp downstream