rs51888661 SNP Detail

Summary

• ID
  rs51888661
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:71368798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCCAGAC AGGGTTTCTC
  TGTGTAGCTC TAGCTGTCTT GGAACTCACT CTGTAGACCA GGCTGTCCTC TAACACAGAG
  ATCTTCCTGC TCTGGAATTA AAGGAGTGTG CCACCATCAC CCAACTTCAA ATACCTTTTC
  AGTGAAGAAA AAGGCATCAG ACTTTATGGG TTACTTGAGT TTACCCAGCT TAGAAAAAGT
  W
  AGTACTTAGC CACAAAGACC TATGTAGTCA TTCTTCATTT GTACATGGGG CCTTTCTGGT
  TCTCTGGTGG AGTTGGTTAT TTTGTGTTTA ACTGGTTTTT AGTGACCAAA GGCATTCTAT
  AAGGCCTTAA GAATAAGGTT TTTGACATAC CAAGATATAT ATATATATAT TTAAAATTTT
  TTTAGGTCAA CAGTCTCAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss52444345	NES15422749	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs51888661					SNP	A	A	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52444345	NES15422749	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:71368798 () rs orientation: forward

Symbol	Name	Function Class
4930474H06Rik	RIKEN cDNA 4930474H06 gene	338 bp upstream
Dact1	dishevelled-binding antagonist of beta-catenin 1	1917 bp downstream
Rr267972	regulatory region 267972	403 bp proximal