rs51888858 SNP Detail

Summary

• ID
  rs51888858
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:131993681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTA TTTCCTTCTG ACTATCTGTC
  Y
  TCTTCCCAGG GTCTACCAGA AAAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60842565	NES16009047	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	C	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51888858					SNP	T	T	T	T	T	T	C	T	C	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60842565	NES16009047	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:131993681 () rs orientation: forward

Symbol	Name	Function Class
Auts2	autism susceptibility candidate 2	within coordinates
Gm42439	predicted gene 42439	within coordinates
Rr621728	regulatory region 621728	920 bp distal
Rr621729	regulatory region 621729	371 bp distal
Tssr53573	transcription start site region 53573	930 bp upstream
Tssr53574	transcription start site region 53574	111 bp upstream
Tssr53575	transcription start site region 53575	1247 bp downstream