rs51889119 SNP Detail

Summary

• ID
  rs51889119
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4297143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTAGGTT TACAGATGCT
  GAGCCATCTC ACTGGCCAGG GCCTGACTTT TATAAAATGC ACTATCACAC TGAAACGGCA
  TCTTCAAGTA GAATTCCTGT ATCAGTAATT GAGAGGGGCA TGACATTTCA CGGTTCTTTA
  GTGTTGCCTG GATAGTATCT TAGCCCCAGA CAACAGAGTT TACTCATCAG ACCAAAGGCC
  R
  GCTAAGTCAG CATTTCCTCA AGGCCCCCAG GCACAGCTTG GCTTTGGTCT CATCAACATT
  TTCTAGACTG GTTCATATTA GAGTAACTTT AAGGATTTTG GGCTATAGGA TCATTTCTTT
  TTATTAACCT TTAATATTTG AAATCATTTG TGATTTGGTA ATCTTTCTAT ATGTCCCCTC
  CCCTCCCCTC CATAGCGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61338478	NES16941019	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51889119					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61338478	NES16941019	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4297143 () rs orientation: forward

Symbol	Name	Function Class
4921501I09Rik	RIKEN cDNA 4921501I09 gene	within coordinates
Ncoa1	nuclear receptor coactivator 1	219 bp downstream
Rr263521	regulatory region 263521	1035 bp distal
Tssr115633	transcription start site region 115633	1216 bp downstream