rs51889165 SNP Detail

Summary

• ID
  rs51889165
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66902694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTC TAACTTCGGA AAGCTCTCTG
  C
  ATGTCGATAA ATGTATGAGT ACTCA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144520365	ENSMUSSNP112353	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss319758742	CHEV_1_66910109	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51889165					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66902694 () rs orientation: forward

Symbol	Name	Function Class
Acadl	acyl-Coenzyme A dehydrogenase, long-chain	258 bp upstream
Cpgi339	CpG island 339	within coordinates
Rr412477	regulatory region 412477	1406 bp distal
Rr412478	regulatory region 412478	269 bp distal
Rr412479	regulatory region 412479	within coordinates
Tssr12011	transcription start site region 12011	276 bp upstream
Tssr12012	transcription start site region 12012	250 bp upstream
Tssr12013	transcription start site region 12013	238 bp upstream
Tssr12014	transcription start site region 12014	220 bp upstream
Tssr12015	transcription start site region 12015	200 bp upstream
Tssr12016	transcription start site region 12016	185 bp upstream