rs51889180 SNP Detail

Summary

• ID
  rs51889180
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70989760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCACTTG CAGCCATCAG
  ACTCTGCTGG TCCTAGCGCC AGGACTCACC TGCTCACTGA CCTGCGCCAG CAGCAGCACC
  CAGAGCGCAG CACAACCTCG GGACTCCATG GCCCCGGTGC CCGAGGGCTC ACAGGACTCA
  GCTCAGCAGT CTAGACTGGG TCACTGGATA GTCCCGGTGT TAGCAGTATG CTAGGGTGCA
  R
  AGGACCGACC CGGCAAAATC GCAGGGTTTC CAGGCAGCGA TTCCACCATG CACATCAGAG
  TTATCACTGC AGCTTCGTTC GGCACCGGGA GGTGGAGTGG CAGTGGTGGC GGGGGGCGGC
  AAAGCACCCG CAGCAACCAA GGGACAGCAG GGAGGAGGGT AGAGAAGGAG AGGGCAGGAC
  TAGGGAGGGC AAAGGAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52651863	NES15472157	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51889180					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52651863	NES15472157	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70989760 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	within coordinates
Cpgi5821	CpG island 5821	within coordinates
Gm36529	predicted gene, 36529	within coordinates
Rr482298	regulatory region 482298	1486 bp distal
Rr482299	regulatory region 482299	1181 bp distal
Rr482300	regulatory region 482300	1254 bp distal
Rr482301	regulatory region 482301	981 bp distal
Rr482302	regulatory region 482302	931 bp distal
Rr482303	regulatory region 482303	81 bp proximal
Rr482304	regulatory region 482304	160 bp proximal
Tssr123158	transcription start site region 123158	62 bp downstream
Tssr123159	transcription start site region 123159	88 bp downstream
Tssr123160	transcription start site region 123160	121 bp downstream
Tssr123161	transcription start site region 123161	149 bp downstream