rs51890049 SNP Detail

Summary

• ID
  rs51890049
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:182780943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTGGGAT AAATCCCCTC
  TGGTTTTAGG AAGGCAGTAA ATGGCACCCA GCCCTCCCTG GCATTGTTCT CAGTCCCACC
  CACATTATAG GAAGGCCCTA CCTCCTGGGC TTACAAGCCT CCTCCTCCCA GCTGCAGAGC
  AGGTAGGCAG GGTTGCAGTT CCATCCCTCT GCACTCAGCT TTCGAGAGCC ACTTGAGGCA
  R
  CTTGTCACAT GGGCTTCAAG CTGCCAGCCG AGGAGGGAGC TGAGAAGACT GTATAATGAG
  ATCTTCCTTG GTAATTAAGT GCTGGGCTTT GTTTTAACCT ATCTCTCCTG CCCTGCTTGA
  TCATATCACC TAGCTGTCAG GCCACGCTGG AGAGTGTGAA TCAACCTGGG ATTACACCCC
  AGCTGCAAGA GGCAGCTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60352275	NES15858509	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51890049					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60352275	NES15858509	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:182780943 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1152	CpG island 1152	1357 bp proximal
Gm69962	predicted gene, 69962	within coordinates
Tlr5	toll-like receptor 5	1410 bp upstream
Tssr10570	transcription start site region 10570	1392 bp upstream