rs51890113 SNP Detail

Summary

• ID
  rs51890113
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122036003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTGTTGGA TCAACAGATA TTCATGTCAC TCTGGAACTG
  TTAGAAAAGA AAGTTCAACT CTATATCCAC TAAATTGAGT TCAATGAAGG TCTCCAGATG
  R
  TAAAATATCT GCAAAGGAAA ACTTACACAA TCAATTTATC GGCAAAATAT AAATTAAATA
  AAATTGTTCT CTTTGTAAAA GAATTGAGAA AAAGTGCAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135737715	ENSMUSSNP1547195	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320909864	CHEV_3_121945272	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51890113					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122036003 () rs orientation: forward

Symbol	Name	Function Class
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	750 bp upstream
Rr375675	regulatory region 375675	406 bp upstream
Rr584261	regulatory region 584261	388 bp proximal
Rr584262	regulatory region 584262	761 bp proximal
Rr584263	regulatory region 584263	844 bp proximal
Rr584264	regulatory region 584264	1499 bp proximal
Tssr31477	transcription start site region 31477	749 bp upstream