rs51891957 SNP Detail

Summary

• ID
  rs51891957
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38121719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGTATGT AAAGTAATCT
  GGACTGTCTT CCCTTAACTA CTATTTCTAA TTAAAATCTT TGAAAACACT CTAACAGTAA
  ACTCAGAGCC ATGACTTTGC TATTTGGCCC TTAACTCACA GGCGTAATCA TCTCAGATCA
  GTTTATAATA ACAGTTATAG AAGATGATTA AACAGGCAAT GATTATCACT GCGCTTTCTA
  Y
  TCTAGAGTCA GTGATTGATA TTCTATCCTG GTTCAAATTA AAACAATCCA AAACAAATGA
  AGTAATCTAA AAAACTTATA CTTAGGCCTT TTCTCTGGTG CCAAGAGAAT ATAAAACCCA
  ATATTTCCAT GGAGTCCATG TTAGACAGAA TATGAGTATT CTATAACCAT CAATAGAGGA
  GGTTTGTACC AATGAAAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61763448	NES17703793	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51891957					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61763448	NES17703793	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38121719 () rs orientation: forward

Symbol	Name	Function Class
Rr271603	regulatory region 271603	1519 bp distal
Rr283322	regulatory region 283322	1683 bp proximal
Rreb1	ras responsive element binding protein 1	within coordinates
Tssr119340	transcription start site region 119340	742 bp downstream