rs51892345 SNP Detail

Summary

• ID
  rs51892345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47261154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGTTTTGA TACCATTCTC ATCCGTTCCT TTATAAGTAC
  CGAATCCTCT GTCCATCATA ACAGGCCTGC CATCTTGAAG ACGAGACTGT AGTTGAGACA
  Y
  TAAGCAAAAA TACATAGATT GTGTGGTAGT GATGCAGCAG TCACAGGGGG ATCTGGAGTA
  CCAGCAGGGG GGCTTTCCTT TTAAAAGGTC AGTGATTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148985311	ENSMUSSNP1851671	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324335510	CHEV_13_47203046	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51892345					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47261154 () rs orientation: forward

Symbol	Name	Function Class
1700026N04Rik	RIKEN cDNA 1700026N04 gene	within coordinates
Cpgi5551	CpG island 5551	818 bp distal
Dek	DEK proto-oncogene	1477 bp upstream
Rr479039	regulatory region 479039	1242 bp distal
Rr479040	regulatory region 479040	620 bp distal
Rr479041	regulatory region 479041	1071 bp proximal
Tssr119627	transcription start site region 119627	1267 bp downstream
Tssr119628	transcription start site region 119628	1248 bp downstream
Tssr122372	transcription start site region 122372	1976 bp upstream
Tssr122373	transcription start site region 122373	1931 bp upstream
Tssr122374	transcription start site region 122374	1803 bp upstream
Tssr122375	transcription start site region 122375	1568 bp upstream
Tssr122376	transcription start site region 122376	1550 bp upstream
Tssr122377	transcription start site region 122377	1507 bp upstream
Tssr122378	transcription start site region 122378	1472 bp upstream
Tssr122379	transcription start site region 122379	1457 bp upstream
Tssr122380	transcription start site region 122380	1445 bp upstream