rs51893329 SNP Detail

Summary

• ID
  rs51893329
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44217347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGTCACCT TCAAAAGTGG
  GTTGGGCCTG CTCCCGACTG TGCGCAGGCG GGAAGCTTTG AGGCTTGAAT TCCCACTACT
  GCGCAAACTC GCGCCGACCA CCCACTGGGC ATGCGCCTAG TTTGGCCGGC CTTGTCTGTC
  ATCTTCCTCA CGGTGTTTGT AGTTCGGTTA GTTGTCTAGG TAGTTCGCCT ACACTGGGGC
  M
  CCACCTTCAT CTTTGATTTT CTTAAGTCTT CTCTGTTTTA TGTACCGTAC CCCAGGTTGA
  CCTTGGACTC ACAGAGACCC ACCTGCCTAA GTGCGCCACC TCACCAAGTT TAAGGGATAC
  TGGGGGATTC ATTCAAGGGT TTCTGCTTGC TAGACAAATG CTCTACCAAC AGACACACAC
  ACACCAGCCC CGGAGTCTAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136393667	ENSMUSSNP3257736	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51893329					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44217347 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21648	CpG island 21648	within coordinates
Hinfp	histone H4 transcription factor	379 bp upstream
Rr195005	regulatory region 195005	1654 bp proximal
Rr206299	regulatory region 206299	within coordinates
Rr368726	regulatory region 368726	within coordinates
Tssr89139	transcription start site region 89139	362 bp upstream