rs51896819 SNP Detail

Summary

• ID
  rs51896819
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:40963808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAC TGGCAACCCA AGAGAGACCT
  T
  ACGTCTCTGC CATCCACACA AGGTT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144660256	ENSMUSSNP589412	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51896819					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40963808 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cnot7	CCR4-NOT transcription complex, subunit 7			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr662586	regulatory region 662586			within coordinates
Rr662587	regulatory region 662587			527 bp proximal
Tssr2553	transcription start site region 2553			449 bp downstream
Tssr2554	transcription start site region 2554			710 bp upstream
Tssr76955	transcription start site region 76955			649 bp upstream
Tssr76956	transcription start site region 76956			1002 bp upstream
Tssr76957	transcription start site region 76957			1022 bp upstream
Tssr81046	transcription start site region 81046			287 bp upstream
Tssr81047	transcription start site region 81047			491 bp downstream
Tssr81048	transcription start site region 81048			510 bp downstream
Tssr81049	transcription start site region 81049			531 bp downstream
Tssr81050	transcription start site region 81050			896 bp downstream
Vps37a	vacuolar protein sorting 37A			1016 bp upstream