rs51897049 SNP Detail

Summary

• ID
  rs51897049
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161079636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAA AGGGGAATGA GGAAGCAGGT
  S
  TGCGGCAGGA TGCTTGACTG GAGTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145910378	ENSMUSSNP1102549	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51897049					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161079636 () rs orientation: forward

Symbol	Name	Function Class
Cpgi926	CpG island 926	636 bp distal
Gm70781	predicted gene, 70781	within coordinates
Prdx6	peroxiredoxin 6	856 bp upstream
Rr372334	regulatory region 372334	1344 bp downstream
Rr396460	regulatory region 396460	717 bp downstream
Rr396461	regulatory region 396461	255 bp downstream
Rr421776	regulatory region 421776	1314 bp distal
Rr421777	regulatory region 421777	912 bp distal
Rr421778	regulatory region 421778	357 bp distal
Rr421779	regulatory region 421779	644 bp proximal
Tssr14577	transcription start site region 14577	1157 bp upstream
Tssr14578	transcription start site region 14578	927 bp upstream
Tssr14579	transcription start site region 14579	922 bp upstream
Tssr14580	transcription start site region 14580	880 bp upstream
Tssr14581	transcription start site region 14581	538 bp upstream