rs51897532 SNP Detail

Summary

• ID
  rs51897532
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45176778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCC AATCCAGGTG GCCCTGGGGA
  R
  CATCATACCT TTAGTTCTGA GAACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61388316	NES16764905	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G	G	G		G	A	A		A
ss136408201	ENSMUSSNP4320624	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G					G
ss322942730	CHEV_9_45073563	CHEVERUD	SCREENING_POP	f	SNP									A				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51897532					SNP	A	G	G	G	G	G	G	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388316	NES16764905	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45176778 () rs orientation: forward

Symbol	Name	Function Class
Il10ra	interleukin 10 receptor, alpha	within coordinates
Mir7086	microRNA 7086	1163 bp downstream
Tssr84758	transcription start site region 84758	585 bp downstream
Tssr89257	transcription start site region 89257	1290 bp upstream
Tssr89258	transcription start site region 89258	1246 bp upstream
Tssr89259	transcription start site region 89259	1229 bp upstream