rs51897799 SNP Detail

Summary

• ID
  rs51897799
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52028925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACATGCCT AAAGCTAGCC
  ACCAAGGTCT ATTCCCTTAT TTGGTCACTT CCTCCTGAGG CTGACTACCA AGGTCCAGCT
  ATCTAAATAT CGAAGTTTAA ACTTAAACAC CTTATCCTAA CTTGGGGTTT TCCCTTGTAC
  CTTTATAAAC CGCCATTTTC CTATGTGCCA AGCCTATCTT CTCTCTATCC AGAGGCAGTC
  Y
  TTTGTCCTCC AGGACAAATA CTTCTCCTCT CCTCTGTTCC CTTCTCCTTC CCCTTCATCC
  TCTATCTCCC GTATTTGTTC TTTATTCCGT GGCCCCTGGC TCTCTGGGGC AAATTAATCT
  CCTTTGTGCT GAGAACTTGG TCTTGGGGAG TCCTGAGCCC ATACTTTTCC ATATCTGTTG
  AATGTGTCAA ATCTCCTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss137728928	ENSMUSSNP3057082	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51897799					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52028925 () rs orientation: forward

Symbol	Name	Function Class
Gm60186	predicted gene, 60186	708 bp downstream
Rr387210	regulatory region 387210	1782 bp downstream
Rr387211	regulatory region 387211	1151 bp upstream