rs51899081 SNP Detail

Summary

• ID
  rs51899081
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52650238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGGTGCC CATAGTTCTG
  GGACCGAGTA GGCTATGCTG GGGAGGGGTC ACCTGGCGGG TTGGGCATAC TTCAACAGGC
  ATTGGACTAG TGGAACATAG GTAACAAGTG TCCTGTTTTA GTGTGTGGGG GGAGTAGGTG
  ATCGAGTCAG GGCCCTGGTC ACTTAGCTGC CACACATTTC TCAAGCTCCC ACACAGACGT
  M
  GGAGAACAGC GAGCCTCCCA GCGTGCCGGA TAGCGGACTG CTTAGAGAAC TCACTCCCCT
  CCCCAGGCCT CTAGAGGAAG GCTCTTACCC AACATGCACC AGGAGCTAAT TTGCATAACC
  CCAAGGTAAA CCACACGGAC CCACGCCGCC AGCGTGATCC CCACTAAGCA GCAGGGGTTC
  ATGAGCATAG CTACACAGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52424017	NES15399358	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	A	A	C	A	A	A	A	A	A	C	A
ss137738327	ENSMUSSNP3062710	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51899081					SNP	C	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52424017	NES15399358	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52650238 () rs orientation: forward

Symbol	Name	Function Class
1700031P21Rik	RIKEN cDNA 1700031P21 gene	1133 bp upstream
Cpgi4596	CpG island 4596	within coordinates
Cpgi4597	CpG island 4597	1186 bp proximal
Gm23296	predicted gene, 23296	1030 bp downstream
Gm24859	predicted gene, 24859	333 bp upstream
Gm35239	predicted gene, 35239	1382 bp upstream
Gm59577	predicted gene, 59577	970 bp downstream
Rr369517	regulatory region 369517	1229 bp upstream
Rr403283	regulatory region 403283	198 bp upstream
Rr403284	regulatory region 403284	961 bp upstream
Rr466025	regulatory region 466025	1148 bp distal
Rr466026	regulatory region 466026	572 bp distal
Rr466027	regulatory region 466027	899 bp proximal
Rr466028	regulatory region 466028	1428 bp proximal
Tssr116285	transcription start site region 116285	1107 bp upstream
Tssr116286	transcription start site region 116286	1084 bp upstream