rs51899442 SNP Detail

Summary

• ID
  rs51899442
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142908757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCTGCAT GTCTTCTACA
  CACATGTCAG GGCATGCACG AGCTCATGCC TGCAATAATA CATACGTAAA TAGGTGTGAT
  AGAAGGACCT AGTAGGACTG CAAATTAAAC TCACGTAGAG CCCAGACTTA GTGTGGGGTG
  AGCCCGGGTT TGCAAAATAA ATGATCAACA TAATAAATAA TGATAATAAT GAGCGGAAGA
  Y
  TAATAGCGCT GAAGGGATCT CAAAAAACTT GGATTTTTAA AAATAGGATG GGCTGGAGAG
  ACGTCTCAGG AGTTAAGAGC ATTTGTTGTT TCTCTGCAGA GGACCTGGGT TCAATTCCCA
  CCACCCACAT GGTGGTTCAC AACCATCCTT AACTTCAGTT CCGAGGGAGT CTGATGCCCC
  TTTCTGATTT GCATGGACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60851178	NES16002629	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51899442					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60851178	NES16002629	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142908757 () rs orientation: forward

Symbol	Name	Function Class
Gm72722	predicted gene, 72722	1697 bp downstream
Rr624054	regulatory region 624054	1986 bp distal
Rr624055	regulatory region 624055	1253 bp distal
Rr624056	regulatory region 624056	152 bp distal
Rr624057	regulatory region 624057	535 bp proximal
Tssr49610	transcription start site region 49610	1991 bp downstream