rs51900207 SNP Detail

Summary

• ID
  rs51900207
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:42310639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             ATGAGTCTGG ATCTGGTGTC CGTGTTGAGC CTGGAGCTGG AGGGAAGGGG
  R
  CAGCCTTGGG TCCCCTTGGG CTAGGAAAGG GATGAGGGAA AATTGTGGTG           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132042363	ENSMUSSNP709061	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51900207					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:42310639 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2743	CpG island 2743	959 bp distal
Cpgi2744	CpG island 2744	15 bp proximal
Gabrb2	gamma-aminobutyric acid type A receptor subunit beta 2	within coordinates
Gm34591	predicted gene, 34591	within coordinates
Rr445405	regulatory region 445405	45 bp distal
Rr445406	regulatory region 445406	1048 bp proximal
Tssr100974	transcription start site region 100974	93 bp downstream
Tssr100975	transcription start site region 100975	27 bp downstream
Tssr100976	transcription start site region 100976	125 bp upstream
Tssr100977	transcription start site region 100977	625 bp upstream
Tssr100978	transcription start site region 100978	946 bp upstream
Tssr100979	transcription start site region 100979	1017 bp upstream
Tssr100980	transcription start site region 100980	1421 bp upstream
Tssr100981	transcription start site region 100981	1446 bp upstream
Tssr100982	transcription start site region 100982	1473 bp upstream
Tssr100983	transcription start site region 100983	1510 bp upstream