rs51900981 SNP Detail

Summary

• ID
  rs51900981
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:4376643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTATTAT TTTGGATTTT
  TCAGCGCAAT CCTATTGGTA ACAGTCTTGC ATATTGAGCC GTTCTTGTAC CCCAGTAACC
  TGTGGATAGT TTTTAGAATT CTAGAACAGT CGTGCAAGAC TGTATGTTGA AATGACTGAA
  TTGGATTTAG CAGAAGCAGC TTCTGTTGAA AATTCATTAA ATAACCCAGT AAATCCAAAT
  R
  CGGTTTCTGC CAGAGATTCT GTTGTAATTT AGCATTTGTG TGATGGCTTA AGTTTGAGAG
  CATTTTTATA TGCCCCTTGG GACATAAAAG AAAACCTGTG GAGTAGAACA GAAGGCATTA
  TTGCAACGTT GTTTTAATTT CGTTCCTATT TTCTGTGTGC ACATGTGAGT GTTGTGTCTG
  TGTGTATGGT TGCATATGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146573625	ENSMUSSNP3448457	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51900981					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:4376643 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi9667	CpG island 9667			470 bp distal
Gm26865	predicted gene, 26865			within coordinates
Gm50096	predicted gene, 50096			within coordinates
Mtpap	mitochondrial poly(A) polymerase			Intron
				Noncoding-Transcript-Variant
Rr370335	regulatory region 370335			914 bp downstream
Rr533218	regulatory region 533218			1041 bp distal
Rr533219	regulatory region 533219			851 bp distal
Tssr149909	transcription start site region 149909			1020 bp downstream