rs51901136 SNP Detail

Summary

• ID
  rs51901136
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152584610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATTCTGA GTTAAAAGTA
  TACACTGTTG TAGTTTTGTG GTTTCTCAAA GATTTGACTA TCAGCTGACA ATACTATCTG
  GGAATCCCAC TTGAAGATGT AAGGCCCAAA GATGGCACGG GCTTACAGAG ACACTTGCAG
  ATCAGTAGCA GTGGCAATGT TTTCTTCAAC AGCCAAACGG AGAGAATAAG TGCAGTGTCC
  C
  TGGTGGATAA GGAACATTAT GTGCGTGCCC CAACAGTGGT GCACATCTGG GCTTAGACAG
  AAAGGACACT CAGATATCAC CCTGCCACAT GTATGAACTC TGGAACCATG TTAAATAAAG
  CAATCCTGAA GCAGAAAGAC AAATACTGTA TCAGCTTCCT CCTCTTCCTC CTCCTTCTCC
  ACTGAGGGAC CCAGAACAGT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136104258	ENSMUSSNP2281690	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321029019	CHEV_3_152541937	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51901136					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152584610 () rs orientation: forward

Symbol	Name	Function Class
Rr66444	regulatory region 66444	591 bp proximal
Rr79922	regulatory region 79922	991 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	within coordinates