rs51903329 SNP Detail

Summary

• ID
  rs51903329
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96321944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGGGGAG ACTGGCTGGA
  TGTCAGCCCA GTCCCTGTCC CATAGCCTGG CATCCCTCAT GAGGAGTCAG CTTGCCTACC
  ATCCGGCATG CAGCAGCCAG GGGACAGGAC CAGGATTCTG CCACTCAAGG ACTCTACTCC
  TCCATCCAGG ACCACGCTTC ACTTACCGGA TGTGATCAAA AGGATGCTCT AGGCTTCCTA
  S
  CTGTGTCTTT ATGAAATTAA ATGCCAGCAC CTAGACTGTA TGTCCCATGC CAGCCCTCTC
  CCATCATTCC CTGCAAGCCT CTCCACGCAG TCTCCCACAG CTTCCTGGGA TCTGTCGCTG
  TCTGTCCCCG TTCTCCAGAC CTCAGCTTCA CTCCCTCCTT AGTCCCATCC CAAGCCCCTC
  TCACTGATTC TCCCTTGAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61442153	NES16828141	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		C	C	G	G		C
ss323109009	CHEV_9_96340310	CHEVERUD	SCREENING_POP	f	SNP										G					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51903329					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61442153	NES16828141	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96321944 () rs orientation: forward

Symbol	Name	Function Class
BC043934	cDNA sequence BC043934	within coordinates
Cpgi22164	CpG island 22164	1672 bp distal
Gm50488	predicted gene, 50488	within coordinates
Gm68666	predicted gene, 68666	1050 bp downstream
Rr368835	regulatory region 368835	1568 bp downstream
Rr684964	regulatory region 684964	851 bp distal
Tssr90963	transcription start site region 90963	1665 bp upstream