rs51905609 SNP Detail

Summary

• ID
  rs51905609
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:34548776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttattttta ttatgtTTTC CTTTCTTCCT
  GCCTGCCTGC CATTCTCCCC ACCCCTTTCC TTCTTTGCAT ACATTAGTGC GGTGCATAGT
  AACTCAGACC TTCTGCTGGC ATGGTGGGTT GACTGTCAGT CAGCCTCTGA AAAAAAAAAA
  W
  GTCCCCTATC AGTGACTGGG CACCAGCCTG TGTTCTGGGT AATGGATGGA CCAAAGCAAA
  TCCCATCTCT AGATCTGAGC AGTCATTATT AGGCCACCAA GCTCCCCAAA CTGTCATGTG
  AACAAGACCC TTCACTCTCC TGCTGTGAAG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145515991	ENSMUSSNP1003692	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325372588	CHEV_17_34466747	CHEVERUD	SCREENING_POP	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51905609					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:34548776 () rs orientation: forward

Symbol	Name	Function Class
H2-Eb2	histocompatibility 2, class II antigen E beta2	within coordinates
Rr405230	regulatory region 405230	62 bp upstream
Rr526148	regulatory region 526148	within coordinates
Rr526149	regulatory region 526149	200 bp proximal
Rr526150	regulatory region 526150	1496 bp proximal
Tssr144017	transcription start site region 144017	249 bp upstream