rs51905824 SNP Detail

Summary

• ID
  rs51905824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:83721217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATACTAAAA AGCAGAAATT
  AAGCAAAAGT TATGCACCGG TGGTGACCTT CCTAATTCTT TGCATTTTTC CTGATGGCCT
  TGAAATGTGA GGACACCATT GATCTGTTGC TATTCTATTT GTGTGGACTT TATACAAGTC
  TACATTTTAT GAATTTCAGG AGGCAACACT TCAGTTACTG AATTGAGCAT TGTCCTTGTG
  Y
  GGAAAACAAA ATAAAAGTCG AATTAGGTTT AAATTTCCAT CTCTCTCCAC TACCTGGCCA
  TATTTCAAAG CGGAGACTAT TTTCAATGAT ATTTCCAGGG ATCATTTCAT GTGTGTGTTC
  ATATTTGCAC ATACATGCAT GCTAATATAT TTGCATATGT AGTTCTAAAT TTTTTTTCCT
  CATTGTGTTT TAAGAATTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61892707	NES17096036	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51905824					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61892707	NES17096036	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:83721217 () rs orientation: forward

Symbol	Name	Function Class
Gm55122	predicted gene, 55122	within coordinates
Mef2c	myocyte enhancer factor 2C	within coordinates
Rr399	regulatory region 399	849 bp distal
Rr1598	regulatory region 1598	within coordinates
Rr483252	regulatory region 483252	982 bp distal
Rr483253	regulatory region 483253	19 bp proximal
Rr483254	regulatory region 483254	535 bp proximal
Rr483255	regulatory region 483255	1710 bp proximal
Tssr4132	transcription start site region 4132	1020 bp upstream
Tssr120502	transcription start site region 120502	741 bp downstream
Tssr120503	transcription start site region 120503	708 bp downstream
Tssr120504	transcription start site region 120504	685 bp downstream
Tssr120505	transcription start site region 120505	479 bp upstream
Tssr120506	transcription start site region 120506	1377 bp upstream
Tssr123327	transcription start site region 123327	1088 bp upstream
Tssr123328	transcription start site region 123328	980 bp upstream
Tssr123329	transcription start site region 123329	944 bp upstream
Tssr123330	transcription start site region 123330	1900 bp downstream