rs51906939 SNP Detail

Summary

• ID
  rs51906939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110950214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACAATAATA
  CCCGCTCCCT GAGAGAAACA GCAGGTAAGC TATTGTGGTG TCACGTGACC AGTATTCGAC
  CAGCTGAGGT AGCTGGATTG CTATGAGTTC AAGGCCATCC TGAGCCCCTG GTGAGGAGAG
  AGACAAGATG GTAGACTGAT AGATTTGAAA GCTCCAGCTG TTCTAGACCT TGTTCCCTAT
  Y
  TCATGGCTTT TTGGTGGCAG GTGGCTTTCT TTATCATGGC ACCAAACAGT CCTACCCTCA
  GCAGCTTACC CTGTCCCCAA GGTCACGGTC GTGGCTTGAG CATGTCCCTT GAGGTTTACG
  TGTTGGAAAC CAAGTCCCCA GTGAGACTGT GTTGACAGGC GGGAAGATCC GGAGACGCCT
  GACCTCGGCA ATGCGTTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61718134	NES17662566	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51906939					SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61718134	NES17662566	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110950214 () rs orientation: forward

Symbol	Name	Function Class
Gm48630	predicted gene, 48630	1594 bp downstream
Gm51959	predicted gene, 51959	within coordinates
Gm60603	predicted gene, 60603	1594 bp downstream
Rr254698	regulatory region 254698	1387 bp proximal
Rr259298	regulatory region 259298	within coordinates
Tssr3954	transcription start site region 3954	1625 bp upstream