rs51907035 SNP Detail

Summary

• ID
  rs51907035
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40160092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGGTACCA GAAGTACTAA GAGAAAAATC TTTGATTTTC
  TGGAAAACCC AGTTCTGGTG AGCTGGAGCT GAGAAAGCTG TGATTAAGAA GAGAGTACCA
  M
  CACTGAACTG AAATCTTCTA TGAAGTATTT CCTGAGAGTC AGCAATTTGA AGCCTTGTTC
  TAGTCAAGAG GAGGGGTTGT ACCCTAAACT GGAATTAAAA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62722061	NES17331312	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51907035					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62722061	NES17331312	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40160092 () rs orientation: forward

Symbol	Name	Function Class
AY036118	cDNA sequence AY036118	within coordinates
Cpgi9159	CpG island 9159	370 bp distal
Gm26917	predicted gene, 26917	413 bp downstream
Rn18s	18S ribosomal RNA	1000 bp distal
Rn18s-rs5	18s RNA, related sequence 5	999 bp downstream
Tssr144610	transcription start site region 144610	1986 bp downstream
Tssr144611	transcription start site region 144611	1863 bp downstream
Tssr144612	transcription start site region 144612	1753 bp downstream
Tssr144613	transcription start site region 144613	1609 bp downstream
Tssr144614	transcription start site region 144614	1587 bp downstream
Tssr144615	transcription start site region 144615	1506 bp downstream
Tssr144616	transcription start site region 144616	1416 bp downstream
Tssr144617	transcription start site region 144617	1389 bp downstream
Tssr144618	transcription start site region 144618	1372 bp downstream
Tssr144619	transcription start site region 144619	1329 bp downstream
Tssr144620	transcription start site region 144620	1306 bp downstream
Tssr144621	transcription start site region 144621	1192 bp downstream
Tssr144622	transcription start site region 144622	1176 bp downstream
Tssr144623	transcription start site region 144623	1146 bp downstream
Tssr144624	transcription start site region 144624	1011 bp downstream
Tssr144625	transcription start site region 144625	994 bp downstream
Tssr144626	transcription start site region 144626	965 bp downstream
Tssr144627	transcription start site region 144627	933 bp downstream
Tssr144628	transcription start site region 144628	774 bp downstream
Tssr144629	transcription start site region 144629	700 bp downstream
Tssr144630	transcription start site region 144630	691 bp downstream
Tssr144631	transcription start site region 144631	594 bp downstream
Tssr144632	transcription start site region 144632	484 bp downstream
Tssr144633	transcription start site region 144633	437 bp downstream
Tssr148065	transcription start site region 148065	1417 bp upstream
Tssr148066	transcription start site region 148066	1340 bp upstream
Tssr148067	transcription start site region 148067	1240 bp upstream
Tssr148068	transcription start site region 148068	1142 bp upstream
Tssr148069	transcription start site region 148069	959 bp upstream
Tssr148070	transcription start site region 148070	895 bp upstream
Tssr148071	transcription start site region 148071	869 bp upstream
Tssr148072	transcription start site region 148072	541 bp upstream