rs51907484 SNP Detail

Summary

• ID
  rs51907484
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70897113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTACAAC ACAGATAATA
  CAAACGATTG AATATCAAGT ACAGATGTGA CTTCATTTGT AGATCCCGGT TGAAAGACTT
  GAAGTTTGTC TATTTTAAGT ATCTATCAGA ATGTAAATTC TGTACTTGTA GAACTCTGAG
  AGAGTTTACC ACCACCTGGG AGCCATTTTC ACCCGACTTC AGTTCATCTA CTGGGAAGGT
  R
  TGCTATTTGT ACTTGTGCTA AGAAAACTAC AGTTCAGATA AATAACACTT GAGCTTCTCC
  ATCTAGATAG GTAGGTGAAC AAGAAGGCAA TAGATCACAT GATTTGAAAG CAAGTGACAC
  AGCTCCTGAC TTACATTAAG ATGAGGCATG AGTAGGGGAT ATGGGTCAGG GATTTGGGTT
  TCCGGACTGG ACCAAGAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52652468	NES15473967	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	G		A
ss324416645	CHEV_13_70887872	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51907484					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52652468	NES15473967	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70897113 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	within coordinates
Rr284828	regulatory region 284828	1970 bp distal
Tssr123156	transcription start site region 123156	1088 bp downstream