rs51908785 SNP Detail

Summary

• ID
  rs51908785
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:108779509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAA AGTCATACAC ACAAAAAAAA
  W
  TTTAGTTTAA AACAAAAAAA AAAGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61215749	NES16730188	PERLEGEN	MM_PANEL2	f	SNP	T		A	T	A	T		T	A		T	T	T		T
ss149026504	ENSMUSSNP3197831	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					A
ss321637451	CHEV_5_109060662	CHEVERUD	SCREENING_POP	f	SNP										T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs51908785					SNP	T	T	A	T	A	T	A	T	A	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61215749	NES16730188	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:108779509 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16204	CpG island 16204	1334 bp distal
Gak	cyclin G associated kinase	1888 bp upstream
Rr616724	regulatory region 616724	1624 bp distal
Rr616725	regulatory region 616725	1031 bp distal
Tmem175	transmembrane protein 175	within coordinates
Tssr47844	transcription start site region 47844	1767 bp downstream
Tssr47845	transcription start site region 47845	1625 bp downstream
Tssr47846	transcription start site region 47846	1593 bp downstream
Tssr52443	transcription start site region 52443	1965 bp upstream
Tssr52444	transcription start site region 52444	1936 bp upstream
Tssr52445	transcription start site region 52445	1882 bp upstream