rs51913033 SNP Detail

Summary

• ID
  rs51913033
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146156207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACATTTA CTCATAGGTA
  GTGCCCCCAG CAGCCGGGGT GGGATCCCAG TCAATTGGCT GCAAGTCCCA CTTCTCCACA
  AAGTCCAGCA TCAGCCCCGC CTTCTAGGGC CCACCTACCA AGCAGCAGGC TGGGTCGCTC
  TCCGTTTAGC ATCAGGCCAC GCCCCTCAGC AGAGACTCCG CCCCGCCTGC CCATAGGACA
  W
  CAGGGCCCGC CCTTCAAGAG GCGTCATTCC CGCAGCCTCC ACCCCAGGCA TGGCGCTGTG
  TGGCCTCCCG GAATTCACTC TGCTGCTGCT GCCGCTGTTG GCACGGCTCT CGGCCGGGGA
  CTGCCCGTGC TCCGAGGCTG CTCTCTGCCA ACCGATCCGC CACCGTCCCG ACTTCGAGGT
  CAGCACTCAT TTGCCCGTCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss136044576	ENSMUSSNP4377372	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51913033					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146156207 () rs orientation: forward

Symbol	Name	Function Class
Ctbs	chitobiase	mRNA-UTR
Rr398117	regulatory region 398117	within coordinates
Rr587029	regulatory region 587029	within coordinates
Rr587030	regulatory region 587030	1000 bp proximal
Tssr32348	transcription start site region 32348	15 bp upstream
Tssr32349	transcription start site region 32349	66 bp upstream
Tssr32350	transcription start site region 32350	1171 bp upstream