rs51917086 SNP Detail

Summary

• ID
  rs51917086
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:61499379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGTTATT TTCTAATGAG
  AGACAGTCAG AGAACGGATC CAGATGAAAG GAGAGGTGGG GATGAACTTC AACTTCAAGA
  TAACAGTAAT CAGGATAAAG TTTACTTTGA CTTGTAGCTG TAATTAAGGA TAGGAGAAAA
  ATATCACTAT GAAAATGTGC CTCCCCTTCC AATTCTGTTG CAGTTGATCA TATGCCCAAC
  Y
  ACAGATTTGT TGTATTAATA ATCCTATGTC TTTATAAAAG TTATACATAG GATATATGAT
  AAAAAGAAGT GTGAGGCAAA GAGGTCTGGC TAAGCAGACC TACTTGTCAA TCTAGATGTA
  CAGACGATCA CTTCTCTGAA CTGTCTCTTG ATAATGATCA TGCAAGTAAG GTTATTGAGA
  CCCAAAGACC AATCTCTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61823462	NES17746800	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51917086					SNP	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61823462	NES17746800	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:61499379 () rs orientation: forward

Symbol	Name	Function Class
Cts7	cathepsin 7	896 bp downstream