rs51919781 SNP Detail

Summary

• ID
  rs51919781
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:86236651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAACTCTGG ATTCTCACTT GCTCTTTCTC TCTTTCTCAT
  CTATCAAAGG GGGTGACACT AGAGCCTGGC CACTGCCTCA CAACTGTCTA GAGGTTAATT
  R
  TGAAGGAACA GGTGACAGAA CTCCTGTCAG AAGTCATCAG TCAATCCATA CTGCTGGTAC
  CTTTCTGTAG CAGGTCTGAA ACTCAACCAA GGATTGTAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60286277	NES15785349	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	G	A	A	A	A	A	A	A
ss146155894	ENSMUSSNP6767483	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51919781					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60286277	NES15785349	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:86236651 () rs orientation: forward

Symbol	Name	Function Class
Gm30117	predicted gene, 30117	504 bp upstream
Rr532331	regulatory region 532331	688 bp distal
Rr532332	regulatory region 532332	289 bp distal
Rr532333	regulatory region 532333	611 bp proximal
Tssr149724	transcription start site region 149724	641 bp upstream