rs51921122 SNP Detail

Summary

• ID
  rs51921122
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79973560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTCCAGTGA TCTCTCAGCA ATACTCTCTT CCTTGATGCT
  GGCTGGGTTC TTACCTTGTC TTTTCTGCAT CTATTTGCAT TTCCGTAAGC CTGCTTCTGA
  Y
  ACCTCTTCAA CTATGTGGTA GCCTTTCCTT TATTTATTTT GTTTGTTTGT TTTTGAGACA
  GGGTTTCTCT GGGTAGCCCT GGCTGTCCTG GAACTCTGTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63570359	NES17024176	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51921122					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63570359	NES17024176	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79973560 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7362	CpG island 7362	1410 bp proximal
Gm24204	predicted gene, 24204	806 bp upstream
Gm31134	predicted gene, 31134	1374 bp downstream
Rr304341	regulatory region 304341	360 bp distal
Rr312104	regulatory region 312104	1240 bp proximal
Syngr1	synaptogyrin 1	1977 bp upstream
Tssr132156	transcription start site region 132156	1839 bp upstream
Tssr132157	transcription start site region 132157	1961 bp upstream
Tssr135417	transcription start site region 135417	456 bp upstream