rs51923373 SNP Detail

Summary

• ID
  rs51923373
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:24791619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACAAGCCC TTGGGAGGAG
  AAGGCGTTTG CTTAGTTCTG TCTGCTTTGC TGTGATGCCC CAGATGGTTT TCATGTGGCG
  CATTCACAGT CACTTAGGTG GTTTAAGGTA GTCAGTCCCT GGCTTATGGT TACCCTCCCG
  TTGAGTTCCG AAGCAAGCCA AGGTTAAAGC CACTGCCGTG TTCACAGTAC TCTTCACCTC
  S
  TCTGCTGTCT TCCCAAGAGT TGGGTTCACT TCCATGATAT CTAGTCCTGA AAGGAGCCCT
  ACAACAAAAA AAGGAAGGCA TAGTGACATA GTTGATCAAC GTAACTGACA TTTTAAAGTC
  TGTGACCCCT GACTCCCAAA TGTATCTGTG AAGAAGAGCT GGTGACTAAC AGTAAACAGG
  TTGTGTGTCA CATCATGTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61262553	NES16880309	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51923373					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61262553	NES16880309	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24791619 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	Coding-NonSynonymous
Tssr92746	transcription start site region 92746	84 bp downstream
Tssr92747	transcription start site region 92747	within coordinates
Tssr97085	transcription start site region 97085	228 bp upstream
Tssr97086	transcription start site region 97086	166 bp upstream
Tssr97087	transcription start site region 97087	140 bp upstream
Tssr97088	transcription start site region 97088	80 bp upstream
Tssr97089	transcription start site region 97089	65 bp upstream
Tssr97090	transcription start site region 97090	34 bp upstream
Tssr97091	transcription start site region 97091	350 bp downstream
Tssr97092	transcription start site region 97092	370 bp downstream
Tssr97093	transcription start site region 97093	394 bp downstream
Tssr97094	transcription start site region 97094	410 bp downstream
Tssr97095	transcription start site region 97095	424 bp downstream
Tssr97096	transcription start site region 97096	689 bp downstream
Tssr97097	transcription start site region 97097	963 bp downstream
Tssr97098	transcription start site region 97098	1111 bp downstream