rs51923700 SNP Detail

Summary

• ID
  rs51923700
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:14371005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCGCATCC CAGACCCCCT
  GGAGTGGCTT AGGGGAGCCC TCGGTGCTCG TAGTACGCAC AGGCGAGTTC ATTTCTGCCA
  CATGCAGTCT TTTATGGGGC TTTAAAGCCA CGCTTGCTTT CATTTGCCGG TACTTCCCCC
  CCTTTTTCCT TTTGGAAAGG TGCTCTATGT CTTGTAATTT ACAAGCAGTA AACCCTAGGA
  A
  CCAGTAAAAA CCGGGGAGCT TGTAGCCTCT AGGACTTGAT CGAGGAAATG ATGAATGGGG
  TGGGGGTGGG ATTGGGATTC CTGAGATTGT AATGTTTTGT CAGGCCAGCA AATCAGATTC
  CAGCCCAGAG TCTTGTTTAT CAAGCAGTGT TTGGGGGTTC ATCATCTGGA GGCTAAAGCC
  CCACAAAAGC CTTCTGTGTC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138986222	ENSMUSSNP2454289	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51923700					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14371005 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi6156	CpG island 6156			within coordinates
Pxk	PX domain containing serine/threonine kinase			Intron
				Noncoding-Transcript-Variant
Rr487874	regulatory region 487874			634 bp distal
Rr487875	regulatory region 487875			503 bp proximal
Tssr4245	transcription start site region 4245			831 bp downstream
Tssr124235	transcription start site region 124235			472 bp downstream