rs51923825 SNP Detail

Summary

• ID
  rs51923825
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79211241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGTGAATT CAGCATGCAT
  GGAGTGTACT TACATAGATC CGGGAAAAAC ATTCATATGT ATAAAATAAA AATAATTTAA
  AAAAATAAAT AAACTGGGGA CTCTCTACAG TGAAAACCTA GCCCCAAAGG TATTAGCATG
  ACCCTGGCAA AGGAGGTCAC TGGCCTCCCT TCCCCAGGCT AAGCAGGAAC AGCGGGCGGG
  Y
  GCTAGCTACA TCAATATTTG CTCAGTGGAA AGGGAGCAGA GAATAAAGGT AACAGAAATA
  AAAGCGCCTG GTTGTCAGGG TGATTAATAA ACACTGAAAA CATGAACAAA GGGGAATGCT
  CTCCCTTTGG TCCTCTCTCT CCCTATCCCC CAGCCCTTTC CATCCTGCCT ATGAAACAAC
  AGCAAAGCAG GGAGCTTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148197503	ENSMUSSNP2968574	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51923825					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79211241 () rs orientation: forward

Symbol	Name	Function Class
2310026G15Rik	RIKEN cDNA 2310026G15 gene	586 bp upstream
Cpgi7329	CpG island 7329	758 bp proximal
Pla2g6	phospholipase A2, group VI	within coordinates
Rr404497	regulatory region 404497	1180 bp upstream
Rr505593	regulatory region 505593	within coordinates
Rr505594	regulatory region 505594	679 bp proximal
Rr505595	regulatory region 505595	913 bp proximal
Tssr132082	transcription start site region 132082	542 bp upstream
Tssr135328	transcription start site region 135328	1085 bp downstream
Tssr135329	transcription start site region 135329	1113 bp downstream
Tssr135330	transcription start site region 135330	1160 bp downstream