rs51925530 SNP Detail

Summary

• ID
  rs51925530
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135159639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCCAATG AAGCAAATTG
  GAAAGCTGCA GTGAAGAGTA ACAGGATACT GATTTCATCT TTTTCATAAT CCTCCCACAT
  CCAATGTATA ACTGAACGCT AACGTGAAAT CCCCATCAAA ATGAACAACT GTGCATGCTG
  CATAAACACC CAGACTCTGA GACTTAATAT ATTCCTCAAA TTCTGCCCTT TTACTTACTT
  M
  TGAGTTTGTG TACATGCATC AGGTGTGTGC ATAAGCCCTC AGAGGTCAGA GGAGGGGTGG
  GATCACCTGG AACTGAAGTT ACATACGGGT GCTAGGACTC AGAGCCCAGT TCTGTGCAAG
  AGCAGTAGGT GCTCTTAACA GTGGACATCC CCCGCCCCCG GCACACTATT TTGTTAACAT
  ATATTTATTG AATGTTTATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147546867	ENSMUSSNP5932766	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51925530					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135159639 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15072	CpG island 15072	843 bp proximal
Gm15979	predicted gene 15979	1487 bp upstream
Gm69862	predicted gene, 69862	1601 bp upstream
Rcan3	regulator of calcineurin 3	within coordinates
Tssr39615	transcription start site region 39615	1688 bp upstream
Tssr43991	transcription start site region 43991	1416 bp downstream