rs51925997 SNP Detail

Summary

• ID
  rs51925997
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81331295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCACAAG GATCTGCAAG
  CAAATGCTTA CGACATTGGG ACACCTGGCC ACCTACTCCT TGGCCTAGGG TAAGGTCCCC
  CACCCCAGGG TGCTCTACAT GCCAGGGCAC TGTTCTGGGG CCACTGTTCT GGGTCCTGCA
  AGGTGCTGGG CAGCCACCTG GCCTCGACCC CTTAGAGCTC CCCGAGCTGG GGCAGCAACA
  W
  GACCCCTGCC ATGGCAACAC AGTTTTAAAG AGAAATTAAT GCAATTCTGG GTATAGGGGC
  CACATAGGCT TGGGTGCACA CACCAGGCTG CCACACCCGC TCAAAAATGG GGGCCCGGCC
  TTGGCATTCA GGCAAAGACA GTATCAAGGC TGAGAGGCAA ACCAAAGAGC AGGGTGCGGG
  AAGCTCTGAG AGGCCCCAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292419	NES16908875	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51925997					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292419	NES16908875	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81331295 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1993	CpG island 1993	39 bp proximal
Ncln	nicalin	within coordinates
Rr402085	regulatory region 402085	823 bp upstream
Rr435684	regulatory region 435684	within coordinates
Rr435685	regulatory region 435685	1613 bp distal
Rr435686	regulatory region 435686	855 bp proximal
Rr435687	regulatory region 435687	974 bp proximal
Tssr98629	transcription start site region 98629	852 bp downstream
Tssr98630	transcription start site region 98630	868 bp downstream