rs51927295 SNP Detail

Summary

• ID
  rs51927295
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:23297668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CTCCATCTGT CCTCATTCTA GGATTCCTCA GACAGCTTAT
  AGGCGTGTGG ACCTATAAGA ACCTCCCAAC TCCCAAATTC ACGTGGCAGC CAAAGATTTT
  Y
  TTTTTCTGGC GCTATAGATT TTTTTTTATT TTTTAAAAAG TTCCTTCATA GAATAGACAA
  AGTAAATATT GAGAATTTCA TCAAAAATAC AAGTTCTTTG A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148843842	ENSMUSSNP3970903	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51927295					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:23297668 () rs orientation: forward

Symbol	Name	Function Class
1700041G16Rik	RIKEN cDNA 1700041G16 gene	within coordinates
Cpgi20156	CpG island 20156	1749 bp distal
Cpgi20157	CpG island 20157	205 bp proximal
Rr175877	regulatory region 175877	1933 bp proximal
Rr186374	regulatory region 186374	within coordinates
Rr400791	regulatory region 400791	1785 bp downstream
Rr400792	regulatory region 400792	941 bp downstream
Rr400793	regulatory region 400793	400 bp downstream
Rr400794	regulatory region 400794	140 bp upstream
Rr400795	regulatory region 400795	472 bp upstream