rs51928750 SNP Detail

Summary

• ID
  rs51928750
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62021899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGCACCA GAAGAAGGCA
  TCGGATCCTG TTACAGATGG TTGTGAGCCA CCACGTGGCT GCTAGGGATT GAACTCAGGA
  CCTCTGGAAG AGCAGTCAGT GCTCTTAACC ACTGAGCCAT CTCTCCAACC CCTTGAAGTT
  ATTCTCTATT CTTGAGAGAC AAGGTGGCAA GATGGTACCC TTGGCATTGG GTAACAGAAA
  M
  GTGCCATAGC AGGTGACCCC CGAGACCGGC TGGCAAAGCT CTGTGGTTTT ATTTTTCTTG
  AGAGGCAAGA GACAGCTTTG TCATTCAGAG GGCATATAGA AACTCGGGTC TGGGTAGGCA
  CCAACCCCCA TCCCTGATGG CAGAGAGAGG GAGAATGACA GAGTCACCAG CCTCTGATCC
  CCTCTGAGTG CCCCAGCCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61279723	NES16893292	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51928750					SNP	C	C	C	C	C	C	A	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61279723	NES16893292	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62021899 () rs orientation: forward

Symbol	Name	Function Class
Rr215629	regulatory region 215629	502 bp proximal
Rr219987	regulatory region 219987	1502 bp proximal
Rr228220	regulatory region 228220	224 bp proximal
Tspan15	tetraspanin 15	within coordinates
Tssr97791	transcription start site region 97791	1366 bp downstream