rs51929194 SNP Detail

Summary

• ID
  rs51929194
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7432569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTAAGGACC CAAGAAGGGC TGTGCCTCAC AGAGGGTTTC
  CCTTAACACA CCCCTGTAGC TGTACAAAGG AATAAACGTC CCGCTTTCAG CTCCGGACAG
  W
  CATGGTTTTC CCGAAGTGTT TTTCTTGCTG TCACCCTGGT TGGCTAACGA AAGGCTTGCT
  TGAGTGGAAT AACAGAATAT GTTGGGCTAT GCAGACTGT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134555764	ENSMUSSNP6076648	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51929194					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7432569 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12953	CpG island 12953	561 bp distal
Pkia	protein kinase inhibitor, alpha	within coordinates
Rr573237	regulatory region 573237	829 bp distal
Rr573238	regulatory region 573238	within coordinates
Tssr814	transcription start site region 814	843 bp downstream
Tssr28292	transcription start site region 28292	915 bp downstream
Tssr28293	transcription start site region 28293	868 bp downstream
Tssr28294	transcription start site region 28294	815 bp downstream
Tssr28295	transcription start site region 28295	796 bp downstream