rs51929980 SNP Detail

Summary

• ID
  rs51929980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:65109104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTAATAA AAATGGAGAC
  TCATGCAGCA ATTGTTGATG AATTCATTTG GGGAAGGTAC ACAAAATAGA GATTAACATT
  GTCTTGAAGT AAATTTTTCT CTAAATCTAT TATCTTCCTA CCAGAATGTT TTAACTGTTT
  TGGTTTTGTT TCAAGTTCCT GTGCCTTTTA ATTTCCACCA TGAAGTGTTA TATTTTTAAT
  R
  TCCTTGACAA AGCTAGCCAC CTTGATTAGC AGCTCAACTC TTGGGACAGA GTCACTAGTT
  TTTACCTAAT TAGAATACAG AACACACAAT AAATAAGTCA GTCAAGACAA TCCATGACAC
  TTTTATTGAG TCTTCTAGTT TACAAGGTAA AAGGAAAGCA GCTCTCTGGA ATACTTTACA
  TAGCTGTAGG AAAATATCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss52441970	NES15415800	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A	G	G	G	G			A	G		G
ss137832464	ENSMUSSNP4351691	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					G				G
ss324071942	CHEV_12_66163317	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs51929980					SNP	G	G	G	G	G	A	G	G	G	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52441970	NES15415800	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:65109104 () rs orientation: forward

Symbol	Name	Function Class
Fkbp3	FK506 binding protein 3	102 bp downstream
Prpf39	pre-mRNA processing factor 39	within coordinates
Tssr113604	transcription start site region 113604	596 bp downstream